rs229197773 SNP Detail

Summary

• ID
  rs229197773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:93017667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCG TAGGGGTATG TTTGCAGTCC
  R
  GGAGAAAGGG GCGCTGTCTT CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395086	CHEV_2_93027479	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229197773					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93017667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11943	CpG island 11943	within coordinates
Rr561108	regulatory region 561108	774 bp distal
Rr561109	regulatory region 561109	within coordinates
Rr561110	regulatory region 561110	95 bp proximal
Rr561111	regulatory region 561111	273 bp proximal
Rr561112	regulatory region 561112	1644 bp proximal
Rr561113	regulatory region 561113	1860 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	226 bp upstream
Tssr18978	transcription start site region 18978	514 bp downstream
Tssr18979	transcription start site region 18979	220 bp upstream
Tssr18980	transcription start site region 18980	237 bp upstream
Tssr18981	transcription start site region 18981	252 bp upstream
Tssr18982	transcription start site region 18982	450 bp upstream