rs229200385 SNP Detail

Summary

• ID
  rs229200385
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29228920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCGGCCG GGCTGACTCA
  TTCCCAGCCG TCTCCTCCGC GAGCCGAGGC CGCAAGCACG CTGCGCCAAC CCGCACCCGC
  CCCGCTCCTC CTCCTCCTCG CGCGCTCTCG CCCGGGGGCT GCCCCGGGAA TCTCCACGCG
  CGCCTCCGCT TCCCCGGAGC CCGCGGCCGC CTCCCCCGTC CCGGCCCAGC CCCGCAGAGC
  K
  GCCCCGCGGG CGGCGCAGGC GCAGTGGGGC GTGCCGGCCT CCGCCCCCCC GCCAACCCCC
  GCCGGCTTGC CCACGCCCCG CTCCGCCGCT CGGGGCCGCT TTCCCGAAGC TGCACCGCGC
  CGGAGCCCGC CGAGCAGGGC AGCTGAGCCG GCGTCGCGGG GCCGAGCGGA GGCGGCGTGC
  GGCCCCTGGA GGGCGGAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss402211695	MGP_WTSI_19_29326010	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229200385					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211695	MGP_WTSI_19_29326010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29228920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	within coordinates
Gm41829	predicted gene, 41829	within coordinates
Gm59364	predicted gene, 59364	19 bp upstream
Jak2	Janus kinase 2	308 bp upstream
Tssr155779	transcription start site region 155779	882 bp downstream
Tssr155780	transcription start site region 155780	61 bp upstream
Tssr155781	transcription start site region 155781	228 bp upstream
Tssr155782	transcription start site region 155782	340 bp upstream
Tssr155783	transcription start site region 155783	372 bp upstream
Tssr155784	transcription start site region 155784	780 bp upstream
Tssr155785	transcription start site region 155785	909 bp upstream
Tssr155786	transcription start site region 155786	934 bp upstream
Tssr155787	transcription start site region 155787	1034 bp upstream
Tssr158749	transcription start site region 158749	574 bp downstream