rs229203937 SNP Detail

Summary

• ID
  rs229203937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCTTAA TGTGGCAGAG
  CCAAGAGGTC TTGGGAATCA AAAGTTAATG ATGCAAATTG TTATCTCTTT ATTGGAAAGA
  AAGCTCCAGA GTAAATGTTA GGTTTAAGAA CCTCAAGACA AACAAGCATG GGAAGTAAAT
  GCCATCCAGG GACTGCCTCT GAGACCACAT GGGAGCTGTA TGCTGAAGAC ATCATGGGCT
  Y
  TGTTCTGGCG ATATGGCTCC TAGGGAAAGA AAGAGAACGA GAATAACCCG CAGGGTGGAG
  ACCGTGGGGA GTGACTGCGC CCGTGCGAGG AACCCACGTG CCCTTAAATC CTTAAATCCA
  CGTGTCCTTA AATCTCTCTT GCTCCTCCTA TTTCTCGACT GCTCCTCCTC CTTCTCGCTT
  GTCCCTGCCA CTTCTCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356428073	MGP_WTSI_2_164101844	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229203937					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356428073	MGP_WTSI_2_164101844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118028 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	1004 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	150 bp downstream
Tssr21550	transcription start site region 21550	38 bp downstream
Tssr21551	transcription start site region 21551	994 bp upstream
Tssr21552	transcription start site region 21552	1038 bp upstream
Tssr27409	transcription start site region 27409	112 bp upstream
Tssr27410	transcription start site region 27410	82 bp upstream
Tssr27411	transcription start site region 27411	57 bp upstream
Tssr27412	transcription start site region 27412	30 bp upstream
Tssr27413	transcription start site region 27413	15 bp upstream
Tssr27414	transcription start site region 27414	3 bp upstream
Tssr27415	transcription start site region 27415	9 bp downstream
Tssr27416	transcription start site region 27416	969 bp downstream
Tssr27417	transcription start site region 27417	978 bp downstream
Tssr27418	transcription start site region 27418	1049 bp downstream
Tssr27419	transcription start site region 27419	1059 bp downstream
Tssr27420	transcription start site region 27420	1079 bp downstream
Tssr27421	transcription start site region 27421	1103 bp downstream
Tssr27422	transcription start site region 27422	1121 bp downstream
Tssr27423	transcription start site region 27423	1159 bp downstream
Tssr27424	transcription start site region 27424	1189 bp downstream
Tssr27425	transcription start site region 27425	1210 bp downstream
Tssr27426	transcription start site region 27426	1468 bp downstream