rs229214134 SNP Detail

Summary

• ID
  rs229214134
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACATAG TTCTTTGGCA
  TGCATCTAAA TTTACCAGTT TTAAAAGGTG AAAGTAAGTT TGCATACTAA TGAGGTAGTT
  GGACTTAATA CATGAAGAAT TAAATCATGG CTGAGCATTT GATATTGTAG GACACAGATT
  ATCTTTAATA TTTTCCCAAA TTGATCTATG TTTTGATTTT TGTAATCACT AGTTCTGACA
  S
  TTCCACTTTT CATAAATAAA TAGTTCAAAA TGGCAGAAGT ACAGTGAGGG CCATTTTGGA
  AATTTCTGTA AATCCTGTTC TAGTCTCAGG CCAAATATTC TTCCTTTAAT ACCTTTTAAT
  AATATAACTG AAATCAGCAG CTCAGGCAAC AACTTTAAAA GTCAAAATTC TAACATAATA
  CTGACTAACA ATGTACTAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315455	MGP_WTSI_2_113871740	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229214134					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315455	MGP_WTSI_2_113871740	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876485 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1278 bp downstream
Rr562815	regulatory region 562815	294 bp distal
Rr562816	regulatory region 562816	201 bp proximal
Tssr600	transcription start site region 600	1558 bp downstream
Tssr601	transcription start site region 601	1568 bp downstream
Tssr19429	transcription start site region 19429	1280 bp upstream
Tssr19430	transcription start site region 19430	1375 bp upstream
Tssr19431	transcription start site region 19431	1455 bp upstream
Tssr19432	transcription start site region 19432	1551 bp upstream
Tssr25660	transcription start site region 25660	1307 bp downstream
Tssr25661	transcription start site region 25661	1324 bp downstream
Tssr25662	transcription start site region 25662	1381 bp downstream
Tssr25663	transcription start site region 25663	1444 bp downstream
Tssr25664	transcription start site region 25664	1474 bp downstream
Tssr25665	transcription start site region 25665	1582 bp downstream