rs229218083 SNP Detail

Summary

• ID
  rs229218083
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGCCTT GGTCAGCATT
  TTATCACAGC AGGGGAAGAA ACTAGGACCC TTGACAAAGT CAATAAAACA GGTAAAGCTC
  GAGGCAACTG ACACAAACGG TCATCTCAGA AGAAAAGAGG AGCCGGGCGT GGTGGTGCAC
  TCCTTTAAGC CCAGCACTCG GGAGGCAGAG GCAGGCAGAT TTCTAAGTTC GAGGCCAGCC
  W
  GGTCTACAGA GTGAGTTCCA GGACAGACAG GGCTACACAG AGAAACCCTG TCTCGAAAAA
  CCAAAAAAAA AAAAAAGGAA GAAGAAGAGG AGGAGGAGGA AGAAAAGAGG GTTCCAAGAG
  TTTGTGCCTG TGACCTCAGC ATTCACATCA GCTGGAACTG CACAGCAAGG TCTGGTCTCT
  CAGAGTAAAG TCAAGAGGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
ss382237251	MGP_WTSI_11_3073882	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	SWR/J
rs229218083					SNP	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237251	MGP_WTSI_11_3073882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1298 bp distal
Cpgi2458	CpG island 2458	73 bp distal
Rr441481	regulatory region 441481	1429 bp distal
Rr441483	regulatory region 441483	1663 bp distal
Rr441484	regulatory region 441484	929 bp distal
Rr441485	regulatory region 441485	55 bp distal
Rr441486	regulatory region 441486	94 bp proximal
Rr441487	regulatory region 441487	1299 bp proximal
Rr441488	regulatory region 441488	1730 bp proximal
Rr441489	regulatory region 441489	1800 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1082 bp upstream
Tssr106449	transcription start site region 106449	550 bp upstream