rs229219062 SNP Detail

Summary

• ID
  rs229219062
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124608045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAGAATT ACATGGAATT
  GGGGCTGGTG AGATGGCTCA GTGGGTAAGA GCACCCGACT GCTCTTCTGA AGGTCGGAAG
  TTCAAATCCC AGCAACCACA TGGTGGCTCA CAACCACCCG TAATGAGATC CGATGCCCTC
  TTCTGGTGTG TCTGAAGACA GCTACAGTGT ACTTTACATA TAATAAATAA ATAAATCTTT
  W
  AAAAAAAAAA GAATTACAGA GAATCAGAAG TTAACCTGTG CTGAACAGCA AGCATATCAT
  TGCTTGAGTG TACCACGTTT TTCTTAAAGA CTCCTCTGCC AATAAACAAA GGTTGTGTTC
  AAATATGTAT GAGTTTTATT AAGAACAAAC CCACCACCAT CTCCACTTTA CTGACAAACA
  CACTAAAGTC CAGACAAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294520	CHEV_4_124391496	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229219062					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124608045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	278 bp proximal
Rr367691	regulatory region 367691	303 bp upstream
Rr599340	regulatory region 599340	1216 bp distal
Rr599341	regulatory region 599341	50 bp distal
Rr599342	regulatory region 599342	70 bp proximal
Rr599343	regulatory region 599343	204 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	557 bp upstream