rs229222232 SNP Detail

Summary

• ID
  rs229222232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAATCA CGGTTCTTTC
  ACCAAGCCGA TCATGGGCAA CTTTAAAGCA AGAAGAAAAA GATGCAGCAT ACTATTCATT
  AAAAGGAAAA TAATTTTCTG GGTTGATGGT ATGTGCCTTT AATCCCAGCA GTCTGGAGGC
  AGAAGGAGGG TCCATATAGC AAAATCCAGG TGAGCCAGGG CTGCATAGTG AGATCCTGTC
  K
  TATTTTTAAA TTATTGCTTC ATTTTTATCA CATCTTTAAC ATTTTAAGTG TGCTATGTAA
  TGTATATTAG CAGTCATGTG AGTATCATTG ATAAATATGT AGATTGCAAG CATCAGGCTA
  TGAAGTAGAA AGAATAAAAT TTGGTGCTTA AATGAGACAG CTGTGAAGTG AATGAAAACT
  CACAGTAGCA GTAACTCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322398768	CHEV_7_117910976	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229222232					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366669 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	744 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	621 bp proximal
Rr653308	regulatory region 653308	331 bp proximal
Rr653309	regulatory region 653309	959 bp proximal
Rr653310	regulatory region 653310	1460 bp proximal
Tssr68503	transcription start site region 68503	601 bp upstream
Tssr68504	transcription start site region 68504	644 bp upstream
Tssr68505	transcription start site region 68505	676 bp upstream
Tssr68506	transcription start site region 68506	707 bp upstream
Tssr68507	transcription start site region 68507	1153 bp upstream
Tssr68508	transcription start site region 68508	1368 bp upstream
Tssr74265	transcription start site region 74265	1839 bp downstream