rs229225524 SNP Detail

Summary

• ID
  rs229225524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115517172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGTTTC CCTCAGTCTA
  AGAGGGGAAG AAGAGATAGC AAAGATGCAG GCCTCCTGGC TCGTTGTCCA CAGACACCGA
  GAAGCTAGCA AGTCTGCCTG CAAACCCAGA CGGAAACTGC ACCGTTCAAG CCAAACACAA
  GGTGGGAGAG GCTGTTGTGT CCGGATTTCT AGAAATGAGC ACTTCTGCAT TGCTGGATAC
  R
  GGTCCAGAAG ACTGGGTTTT GACTCCTAGG GAGACTGAGG TGGAAGGACC ACAGTGTGAG
  GGCCAGCCTG GACTACACAG CTCAACTCAG TCTTAAAGGC TAGAAGGAAA TCTGTGACTC
  ACACCTGTAA CCTAGAACCC TGGAGGCAAG GGCAAGAGGA CTGGGAGCCA GCCTGGGCTA
  TATAAGACCT CAAGAAATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384832894	MGP_WTSI_11_115487660	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229225524					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384832894	MGP_WTSI_11_115487660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115517172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	1367 bp proximal
Rr369445	regulatory region 369445	1256 bp upstream
Rr459966	regulatory region 459966	69 bp distal
Rr459967	regulatory region 459967	1243 bp proximal
Rr459968	regulatory region 459968	1789 bp proximal
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr111780	transcription start site region 111780	1356 bp downstream
Tssr111781	transcription start site region 111781	1381 bp downstream
Tssr111782	transcription start site region 111782	1397 bp downstream
Tssr111783	transcription start site region 111783	1415 bp downstream
Tssr111784	transcription start site region 111784	1747 bp downstream
Tssr111785	transcription start site region 111785	1779 bp downstream
Tssr111786	transcription start site region 111786	1887 bp downstream
Tssr111787	transcription start site region 111787	1914 bp downstream