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rs229225956 SNP Detail
Summary
  • ID
    rs229225956
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:104127837 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCTGCGGAGC CGGAGCGCCG
    AGACCAACGC CTGCCCCAGC TGCCAGGAAA CTGGCGCTTT CAAACCCGCC GCAACCTCCT
    CCCCGCTCGG CCCCTCCCCC GCCCTCGCCG GCCCGGCCCC GCCCCCTCCC GCAGCGCAGC
    GCCCGGCGCG TTGCCGTCAC CAGCTCTGCT CCGGAGGACC CGCCCAGTTC TCGGCTCCGC
    R
    CCGTGGATTG GGTTCTGGCA GCTGGGGGCG GCCCTCGGCG GGCATGCTGA TTTCTGATTG
    GGTGGTCTAA GTAGAGGAGG CGGGCACTAG AATGACTGAA GTTTAGAGAG GGAGGAAAAA
    AGAAGTTTAG AGTGTGAGGG AGGGAGAAGG GGGAGGGAAA AGAGAGGGTT GGTCTGGGAG
    CGGGCACAGG TCGCCTAGAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359085545 MGP_WTSI_3_104024444 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229225956 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359085545 MGP_WTSI_3_104024444 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:104127837 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
2010002M09Rik RIKEN cDNA 2010002M09 gene 82 bp upstream
Cpgi13643 CpG island 13643 within coordinates
Gm66179 predicted gene, 66179 within coordinates
Magi3 membrane associated guanylate kinase, WW and PDZ domain containing 3 147 bp upstream
Rr397911 regulatory region 397911 within coordinates
Rr582475 regulatory region 582475 852 bp distal
Rr582476 regulatory region 582476 within coordinates
Rr582477 regulatory region 582477 93 bp proximal
Tssr31043 transcription start site region 31043 350 bp upstream
Tssr34876 transcription start site region 34876 164 bp upstream
Tssr34877 transcription start site region 34877 143 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory