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rs229226614 SNP Detail
Summary
  • ID
    rs229226614
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr1:40504689 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAAAATAAT TGTGCCATTG
    ACTCCTTGTG TGTTTTCTTC ATGTGTGTTT GAAGAGTTCT AGCTTATTAA AAAAAAAAAT
    CTAGAAATAC TGTTTGGCCT TCGTTTCTTT TGAACAGTTT AAAATCTCAC TATAACTTCC
    CAATTGTGGC TTTCCACCCA TCCAGGAGGC TGGGCATCCT GCGCTGGCTG GCACTATGTT
    S
    GCTCTGCGAG CCTGGCAGTC TCAAGGACTC TCCTCCCGCA GTGCAGGAGT CCTGGGTTCT
    CAGCGCCCTC TGCCTGAAGG GTGTGGCGCG CACAGGGCAC ACAGGTGGTT CTTGTGGTTG
    AGTAGACAGG CTGCAGGTTC CGGGAAGCCA AAGGCGGTGG CTGTGCCTCC CTGGAGGTCT
    GGCGGAGGAG TCAGCTGAGA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss349351215 MGP_WTSI_1_40522374 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229226614 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss349351215 MGP_WTSI_1_40522374 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:40504689 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Il1rl1 interleukin 1 receptor-like 1 114 bp downstream
Il18r1 interleukin 18 receptor 1 23 bp upstream
Rr16188 regulatory region 16188 within coordinates
Rr29358 regulatory region 29358 111 bp proximal
Rr33590 regulatory region 33590 1512 bp proximal
Rr371160 regulatory region 371160 within coordinates
Tssr6465 transcription start site region 6465 112 bp upstream
Tssr6466 transcription start site region 6466 174 bp upstream
Tssr6467 transcription start site region 6467 436 bp upstream
Tssr6468 transcription start site region 6468 447 bp upstream
Tssr6469 transcription start site region 6469 540 bp upstream
Tssr6470 transcription start site region 6470 559 bp upstream
Tssr6471 transcription start site region 6471 651 bp upstream
Tssr6472 transcription start site region 6472 765 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory