rs229232449 SNP Detail

Summary

• ID
  rs229232449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185044957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTCTTC TCTAGGTGGC
  CAATGTTTCT AAATTTTATC CATTTTATGT TAAAAAATAC TTGTTGCCAG GAAGTGGTGG
  TTCACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGTAGG TGGATTTCTG AGTTTGAGAC
  CCGCCTGGTC TACAGAGTGA GTTCCAGGAC AGCCAGAGCT ATACAGAGAA ACCCTGTCTC
  M
  GAAAAAAAAA ACAAAACAAA ACTTGTTTTC ATTAACCAGG GACTAGATTG CCACCTAAAT
  TATACGGGGA TTATATTACA GATTCAGGAA ATGGCCAATG ATATTAACAT TAAAAGTTCT
  TGAGGAAAAG AAGCGAACAT AAGCTATAAA TGAAATTGAC ATGTCAGAGT TTGAGTCCAG
  AGTTTAATTC TGTCAGTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss352688737	MGP_WTSI_1_187136639	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	A	A	C	A	A	C	A	C	A	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs229232449					SNP	A	A	C	A	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C	C	C	A	A	C	A	A	C	A	C	A	C	C	A	A	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352688737	MGP_WTSI_1_187136639	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185044957 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	within coordinates
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	559 bp upstream
Mir215	microRNA 215	821 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	559 bp proximal
Rr425363	regulatory region 425363	563 bp distal
Tssr10600	transcription start site region 10600	560 bp downstream
Tssr10601	transcription start site region 10601	910 bp upstream