rs229237650 SNP Detail

Summary

• ID
  rs229237650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15044646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAACGTA AACCACCACA
  CTGTGCACTC TCGGCCCAGC AGTAGACCTT AGCCAGGGGC AGGCGTGGGA CTCAGCGAGC
  AAAGAAACAG AAGGTGTGGC TGCAGTGTGG GAAGGCCCCA GGCAGCCCCG GGGTTGCTGC
  ACAGGTGTTT CCTGTCCTGT CCTCTGAACT CAGAGCAAGC AGAGAGGGGT GACAGAGGTG
  Y
  TGGGCCACAC TCAACCTCCT GTGTCCCCGT GGAGCGGATA CAGCGTCCAG AAGTGATGCA
  GTCAAGTCAA AGGGCCAAGT TTCCTATTAA AAAAAAAAAA TGAGTGTGAG TCTTCTAAGT
  GCCACGGCCC TAGTCATCAG GGGGCTGTGA GTTATCTTGT GCTCATGGCT ATGTGTGGAT
  GGGGGACTGT GAGTTAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373786522	MGP_WTSI_8_14994646	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	T	C	T	C	C	T	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229237650					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	T	C	T	C	C	T	C	T	C	T	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373786522	MGP_WTSI_8_14994646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15044646 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm35149	predicted gene, 35149	within coordinates
Gm56855	predicted gene, 56855	within coordinates
Gm64037	predicted gene, 64037	within coordinates
Rr368499	regulatory region 368499	within coordinates
Rr368500	regulatory region 368500	1521 bp upstream
Rr660150	regulatory region 660150	1498 bp distal
Rr660151	regulatory region 660151	1783 bp distal
Rr660152	regulatory region 660152	within coordinates
Rr660153	regulatory region 660153	4 bp proximal
Rr660154	regulatory region 660154	1387 bp proximal
Tssr76473	transcription start site region 76473	1636 bp downstream
Tssr76474	transcription start site region 76474	1 bp upstream
Tssr76475	transcription start site region 76475	1482 bp upstream
Tssr76476	transcription start site region 76476	1510 bp upstream
Tssr80482	transcription start site region 80482	146 bp upstream
Tssr80483	transcription start site region 80483	1348 bp downstream