rs229238452 SNP Detail

Summary

• ID
  rs229238452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38106148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTTTCA GCTCCCTCCC
  CCAGTCCACC CCTGGTGGCA CTTTCAAATC TATATACGTC TGAGCTCACG TTGTTGGTAT
  ATTGGATCAC TGAGATGCCT AAGAAAAATG TTCTTTTTCT ACACCCCAGC AGGACCCTTT
  TTGGAATTTT GAGGCTCAAT TGCCCATACA TATGAGTGCA GGTCAATTCA AAATAGGTAG
  S
  CCACTTCCCC ACCATGTTTC TGAGTTTCAA GTTAGGATCC GTTAAGGACA ATAGATATTA
  AAGTATCCCA CGATTATCCT GGAGACTTCC CCTAGGAAAC TCAAGTGGAG ACCCCGTGAG
  CTAATTAAGT GGTGTTTGGT TTTGTGACGA ATAAAGAACA TTTCAAGGCA CCAGTCTTTA
  AAGACCTGCT ATATTGATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402412012	MGP_WTSI_19_38192190	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229238452					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402412012	MGP_WTSI_19_38192190	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38106148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	1524 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Tssr156244	transcription start site region 156244	938 bp downstream
Tssr156245	transcription start site region 156245	615 bp upstream
Tssr159111	transcription start site region 159111	899 bp upstream
Tssr159112	transcription start site region 159112	849 bp upstream
Tssr159113	transcription start site region 159113	784 bp upstream
Tssr159114	transcription start site region 159114	607 bp downstream
Tssr159115	transcription start site region 159115	646 bp downstream
Tssr159116	transcription start site region 159116	682 bp downstream
Tssr159117	transcription start site region 159117	780 bp downstream