rs229246448 SNP Detail

Summary

• ID
  rs229246448
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71247727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGAAGGGT AGACAGACAT CTCCTGAAAC AGAACTGATC
  TTTAATCAGA ACTGAAGGGC TGCAGTCTCT CAGGGAAGTG AGACTATGCC CAAGTGGCAC
  T
  TGTTGGGGAG TAAGGGGTTG GGTTTTGTAG GACTGAAAGG GGGGGGGGGA GGCGGAGGGA
  GGGAGCTTTG GGGTTGGAAG ATTCCATTTG CAGGTCAGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321817324	CHEV_6_71220737	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229246448					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71247727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17522	CpG island 17522	659 bp proximal
Krcc1	lysine-rich coiled-coil 1	934 bp upstream
Mir8112	microRNA 8112	928 bp upstream
Rr379579	regulatory region 379579	843 bp downstream
Rr379580	regulatory region 379580	within coordinates
Tssr56988	transcription start site region 56988	131 bp upstream
Tssr56989	transcription start site region 56989	832 bp upstream
Tssr56990	transcription start site region 56990	929 bp upstream
Tssr61348	transcription start site region 61348	17 bp upstream
Tssr61349	transcription start site region 61349	within coordinates
Tssr61350	transcription start site region 61350	738 bp downstream