rs229247641 SNP Detail

Summary

• ID
  rs229247641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:136189285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACACTT GGCCAGCATC
  TACGGCCCCA GCTGGGCTGG CCACTGGCCA CAGATCCCTA AGTTCCTGCT CAAGTTCCTC
  GGATTCCCAA ACTCGTGGGT GAGGCCAGAG ATGGGACAGA CCAAGCACAA AATGTTACCT
  CTTCCAGTAA ACCCTACTCC CTGAGGCTGT CTTGTTTATT TTTGAGACAG GATTTCACTG
  Y
  GTAGCCTAGA TTGGCCTAGA ACTGGACATG TAGATCAGAA TAGCCTTAAA GCCTGTCTCT
  CCCTCTTGGA TGTTGGTTAT CTTATTTATT TTGGTGTTTA TGGTGTGTGC GTGTGCGTGC
  ACATGTGTGT GCATCCTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GCGCGCGCAC
  ATGTGTGCAT CCCTGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366851361	MGP_WTSI_5_136636301	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229247641					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366851361	MGP_WTSI_5_136636301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:136189285 () rs orientation: forward

Symbol	Name	Function Class
D5Mit341	DNA segment, Chr 5, Massachusetts Institute of Technology 341	1292 bp proximal
Orai2	ORAI calcium release-activated calcium modulator 2	within coordinates
Tssr53792	transcription start site region 53792	315 bp downstream
Tssr53793	transcription start site region 53793	517 bp downstream
Tssr53794	transcription start site region 53794	776 bp downstream
Tssr53795	transcription start site region 53795	814 bp downstream
Tssr53796	transcription start site region 53796	861 bp downstream
Tssr53797	transcription start site region 53797	892 bp downstream
Tssr53798	transcription start site region 53798	950 bp downstream
Tssr53799	transcription start site region 53799	964 bp downstream
Tssr53800	transcription start site region 53800	984 bp downstream
Tssr53801	transcription start site region 53801	1591 bp downstream
Tssr53802	transcription start site region 53802	1627 bp downstream