rs229249530 SNP Detail

Summary

• ID
  rs229249530
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116851001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCATG CACCAAACGG
  GAGTATAGTC TGTTTCCTCT CCCCAGGCTG CTCTCAGGAA CGTGTCATTC TTCAGCTCCG
  GGAAATTCTG GAGTCTGGAG ATCAGGTGAA AGGTACAGGT AGGAGTAAAT GTCATTATGC
  TAGACTGGGA TTCGGGGAGG GCACCGGTCC AGTCAGGCCG TTATCTGCCT ACTCCAGACC
  W
  GCTTGCAAAC CATGGCTCCC CGCCCACCGC CTCCCCTCTA TCAAGTGGCG CACAAGCTCC
  CAGGAGGAGG GCCCCACTAG GGCCTCTTTC CTACACATTT GTCCACTTTC CCAAACTCAA
  AGAAACTGGA GGGACTAGAG AAGTGGAATG AAGATCCAGT AAGGGGATTA GGGGAAAGGA
  GTTAATTTGG GGAACCGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362960730	MGP_WTSI_4_116666409	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229249530					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362960730	MGP_WTSI_4_116666409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116851001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14645	CpG island 14645	301 bp proximal
Cpgi14646	CpG island 14646	1501 bp proximal
Hectd3	HECT domain E3 ubiquitin protein ligase 3	1513 bp upstream
Rr367675	regulatory region 367675	445 bp upstream
Rr598014	regulatory region 598014	599 bp proximal
Rr598015	regulatory region 598015	1405 bp proximal
Tssr38587	transcription start site region 38587	1502 bp upstream
Tssr38588	transcription start site region 38588	1544 bp upstream
Tssr38589	transcription start site region 38589	1571 bp upstream
Tssr42936	transcription start site region 42936	1240 bp upstream
Tssr42937	transcription start site region 42937	170 bp upstream
Tssr42938	transcription start site region 42938	101 bp upstream
Tssr42939	transcription start site region 42939	50 bp upstream
Tssr42940	transcription start site region 42940	550 bp downstream
Tssr42941	transcription start site region 42941	570 bp downstream
Urod	uroporphyrinogen decarboxylase	within coordinates