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rs229263116 SNP Detail
Summary
  • ID
    rs229263116
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385311 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAACTAAAG CAATGGATGG
AGCCAACACC ATGCGGATCC CTGGCAGATG TTCCCCAAGG GCTTCATCTG GAAATGCACC
TCTTAGCAGC TACTTACAGA CACTGCCCCT CAACCTCACT AGTTCCTGCC CAGCCACGAA
AGAAACTGGC AACCCAGGCA ACACCTCGGG TCCTTCGATT ATTTTCTAAG TGAAATAGTT
Y
CATGTTCCAA GTGAAGATTT TGCTTATATT TTCATAGTTT CACACCATAT CTGTCCCCGA
CAAATGTCAG CTGTTTAGTT ATCAGTTCTA GGCACATTGA ACACGAAGAC TTTTTCCATG
AAAAAATCTT CAGTTACCAA AAGCTAAAAC CCTCCCCTAG CACAGACCCT GCATTAACCC
CCTTCACTCT GAAAATGATT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552109 MGP_WTSI_19_44471362 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229263116 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552109 MGP_WTSI_19_44471362 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385311 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 283 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 133 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 241 bp proximal
Rr548237 regulatory region 548237 1454 bp distal
Rr548238 regulatory region 548238 within coordinates
Rr548239 regulatory region 548239 1842 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 508 bp upstream
Tssr156606 transcription start site region 156606 446 bp downstream
Tssr156607 transcription start site region 156607 125 bp downstream
Tssr156608 transcription start site region 156608 269 bp upstream
Tssr156609 transcription start site region 156609 479 bp upstream
Tssr159451 transcription start site region 159451 1921 bp upstream
Tssr159452 transcription start site region 159452 1627 bp upstream
Tssr159453 transcription start site region 159453 1558 bp upstream
Tssr159454 transcription start site region 159454 1539 bp upstream
Tssr159455 transcription start site region 159455 1233 bp upstream
Tssr159456 transcription start site region 159456 1114 bp upstream
Tssr159457 transcription start site region 159457 1085 bp upstream
Tssr159458 transcription start site region 159458 1051 bp upstream
Tssr159459 transcription start site region 159459 959 bp upstream
Tssr159460 transcription start site region 159460 923 bp upstream
Tssr159461 transcription start site region 159461 862 bp upstream
Tssr159462 transcription start site region 159462 830 bp upstream
Tssr159463 transcription start site region 159463 791 bp upstream
Tssr159464 transcription start site region 159464 761 bp upstream
Tssr159465 transcription start site region 159465 741 bp upstream
Tssr159466 transcription start site region 159466 723 bp upstream
Tssr159467 transcription start site region 159467 659 bp upstream
Tssr159468 transcription start site region 159468 413 bp upstream
Tssr159469 transcription start site region 159469 348 bp upstream
Tssr159470 transcription start site region 159470 334 bp upstream
Tssr159471 transcription start site region 159471 301 bp upstream
Tssr159472 transcription start site region 159472 275 bp upstream
Tssr159473 transcription start site region 159473 256 bp upstream
Tssr159474 transcription start site region 159474 234 bp upstream
Tssr159475 transcription start site region 159475 187 bp upstream
Tssr159476 transcription start site region 159476 169 bp upstream
Tssr159477 transcription start site region 159477 160 bp upstream
Tssr159478 transcription start site region 159478 139 bp upstream
Tssr159479 transcription start site region 159479 121 bp upstream
Tssr159480 transcription start site region 159480 89 bp upstream
Tssr159481 transcription start site region 159481 30 bp upstream
Tssr159482 transcription start site region 159482 47 bp downstream
Tssr159483 transcription start site region 159483 138 bp downstream
Tssr159484 transcription start site region 159484 172 bp downstream
Tssr159485 transcription start site region 159485 298 bp downstream
Tssr159486 transcription start site region 159486 305 bp downstream
Tssr159487 transcription start site region 159487 386 bp downstream
Tssr159488 transcription start site region 159488 403 bp downstream
Tssr159489 transcription start site region 159489 457 bp downstream
Tssr159490 transcription start site region 159490 559 bp downstream
Tssr159491 transcription start site region 159491 594 bp downstream
Tssr159492 transcription start site region 159492 645 bp downstream
Tssr159493 transcription start site region 159493 671 bp downstream
Tssr159494 transcription start site region 159494 691 bp downstream
Tssr159495 transcription start site region 159495 809 bp downstream
Tssr159496 transcription start site region 159496 879 bp downstream
Tssr159497 transcription start site region 159497 892 bp downstream
Tssr159498 transcription start site region 159498 904 bp downstream
Tssr159499 transcription start site region 159499 934 bp downstream
Tssr159500 transcription start site region 159500 965 bp downstream
Tssr159501 transcription start site region 159501 980 bp downstream
Tssr159502 transcription start site region 159502 1016 bp downstream
Tssr159503 transcription start site region 159503 1029 bp downstream
Tssr159504 transcription start site region 159504 1108 bp downstream
Tssr159505 transcription start site region 159505 1221 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory