rs229275775 SNP Detail

Summary

• ID
  rs229275775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87470224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTAGCA AGCAACTAAC
  TACCAGTAAC TATCAGTAAC TAGCAGGCAA CTAACTACCA GTAACTACCA ATATTGTAAA
  GGAGGAAGTT TCTTCTTCAG GTTTGTCTGT TTCTGATTCT AAAGATCTGA TGAAGGCAAG
  GTCTAAATGA AATACATCAA ACATTTCAAT ATTTCACAAA TTGCATATAG AAATTTCTAT
  Y
  TTTATTTAAA AGATCTGAAA CATTTAATTA AGAGAATTTC CAGTCTTTAA AACTTGAGTG
  TATCAACTAC CATAAAATAT AATTTAAGCA GTCATCTAAA ACTATGCAAA GTCACTAAAC
  TTGTTTTGTT ACCTTAATTA TGTAAGACTG GTTTTCAAAA TACCTTACCC ACTGAAAACA
  AAATCCTACT CTTCAAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375448138	MGP_WTSI_8_89267495	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229275775					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375448138	MGP_WTSI_8_89267495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87470224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	1475 bp proximal
Gm63869	predicted gene, 63869	within coordinates
Rr666882	regulatory region 666882	789 bp proximal
Rr666883	regulatory region 666883	1813 bp proximal
Rr666884	regulatory region 666884	1868 bp proximal
Siah1a	siah E3 ubiquitin protein ligase 1A	within coordinates
Tssr78572	transcription start site region 78572	1851 bp upstream
Tssr78573	transcription start site region 78573	1904 bp upstream
Tssr78574	transcription start site region 78574	1940 bp upstream
Tssr78575	transcription start site region 78575	1994 bp upstream