rs229277153 SNP Detail

Summary

• ID
  rs229277153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90944887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCTGCACG GGGAGACAGG TAGGGTCCAG
  CATCACCGAT CCAGTGACTG TAGCTGCATT TACATTTATG AACCTTGCAT ATTCCTAGCC
  AAGGTCAACT GGCCCAGCAG CCATGTTTCA GAGgtgtgtg tgtgtgtgtg tgtgtgtgtg
  Y
  atgtgcatgt gcatgtgtat gCACACATGC GTGTTTGTGG ATGCTTCTCT ACCTGTACAG
  GTCTCTAAGT CTGTCTGTAT TGTGAATGAA CAGGCATCAT TTCAAAGTGC GTGAGAGTCT
  GTGTGTGCAT CAGTATtgtg taggagtgtg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391688	CHEV_2_90954699	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229277153					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90944887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	500 bp proximal
Rr373534	regulatory region 373534	875 bp downstream
Rr560649	regulatory region 560649	1654 bp distal
Rr560650	regulatory region 560650	371 bp distal
Rr560651	regulatory region 560651	647 bp proximal
Rr560652	regulatory region 560652	710 bp proximal
Spi1	Spi-1 proto-oncogene	Intron
Tssr18850	transcription start site region 18850	1264 bp downstream
Tssr18851	transcription start site region 18851	259 bp downstream
Tssr18852	transcription start site region 18852	199 bp downstream
Tssr18853	transcription start site region 18853	618 bp upstream
Tssr18854	transcription start site region 18854	653 bp upstream
Tssr18855	transcription start site region 18855	818 bp upstream
Tssr18856	transcription start site region 18856	865 bp upstream
Tssr18857	transcription start site region 18857	980 bp upstream
Tssr18858	transcription start site region 18858	1044 bp upstream
Tssr18859	transcription start site region 18859	1151 bp upstream
Tssr25158	transcription start site region 25158	1203 bp downstream