rs229286523 SNP Detail

Summary

• ID
  rs229286523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118784148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGGCAC ACACACACAG
  AGAGCTCGCG GTGCAGGTTT GGGGGTGGGG GGCTTGGGTG GGATGTTAGC CTAACCCAGT
  CCCAGTTGCG TTTTTTTGGC TTCGGTTTCT GGAGGAAAAG ACCGGGTTAA CTTGGGAACC
  CCGGAGGAAG ACCGGGATGG AGAACTGGGT TTCCAACCCC TGTGGGAGGG GCGTGGTGTG
  R
  ATATGACCTG CTTCTCCCTC AGCAGCTCCT TTCCCCTCCA GTATGTCCTC AGTTTTTCTT
  CTGACTCTCT CTCTAGCTAC TTGTCCTCGC TCCCCACCAA TGCCTGGAGT CCATCTTCAC
  GTAGAGTATT TTACATCCTG GTATGGCGGA TGGGGGGTCG CGATTGTTGG AGCCCAGAGA
  ATGTTGAAAG GTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372909535	MGP_WTSI_7_126328439	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229286523					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372909535	MGP_WTSI_7_126328439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118784148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	132 bp distal
Cpgi19632	CpG island 19632	355 bp proximal
Gm73654	predicted gene, 73654	within coordinates
Gpr139	G protein-coupled receptor 139	387 bp upstream
Rr381384	regulatory region 381384	171 bp upstream
Rr654600	regulatory region 654600	3 bp distal
Rr654601	regulatory region 654601	within coordinates
Rr654602	regulatory region 654602	1405 bp proximal
Rr654603	regulatory region 654603	1642 bp proximal
Tssr74477	transcription start site region 74477	379 bp upstream
Tssr74478	transcription start site region 74478	353 bp upstream
Tssr74479	transcription start site region 74479	306 bp upstream