rs229290549 SNP Detail

Summary

• ID
  rs229290549
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79420613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGATAGTA TTCCGCTTCA
  TCTTCAAGTT GGATGGTAGG ATTCTCACGA TACTTTATAC GTCAGTCACA TACCAAAAAA
  AAAAGCACTT TAAATTGATT TAGTAAGAAG TGTCCGTCCT TTCCTACCAG AGTAGACTTA
  TGCAGTCAGT GTTAAATGAC TTAATGTAGG TGATTTTAAT CACATTAGTT CATTCACAGT
  K
  CTGTATACAT CACAGTGTTG TACACGCTAG CCGTGTACCA CAGGACAACA TAATAGATCT
  GCTGTTGGTT GTCTTCAGCC AGATGTGCTG TCATGCCCTA GTAAACAAGC TGTTGGCACC
  ATCAGACTCT CTCTTTGCTC ACAATTGCCT GAGAACAGAA ACTGTTCCTA CATCTCTATT
  TTATGCCCCA GAGGCCAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383980782	MGP_WTSI_11_79343289	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229290549					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383980782	MGP_WTSI_11_79343289	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79420613 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	within coordinates
Rr247297	regulatory region 247297	987 bp proximal
Rr402776	regulatory region 402776	809 bp downstream
Tssr103449	transcription start site region 103449	1650 bp downstream
Tssr103450	transcription start site region 103450	1595 bp downstream
Tssr103451	transcription start site region 103451	1572 bp downstream
Tssr109512	transcription start site region 109512	605 bp downstream
Tssr109513	transcription start site region 109513	620 bp downstream
Tssr109514	transcription start site region 109514	636 bp downstream
Tssr109515	transcription start site region 109515	654 bp downstream
Tssr109516	transcription start site region 109516	688 bp downstream
Tssr109517	transcription start site region 109517	715 bp downstream
Tssr109518	transcription start site region 109518	730 bp downstream
Tssr109519	transcription start site region 109519	762 bp downstream
Tssr109520	transcription start site region 109520	782 bp downstream
Tssr109521	transcription start site region 109521	818 bp downstream