rs229300524 SNP Detail

Summary

• ID
  rs229300524
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32904812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAGAGGA CTTAGGGACG
  GGTGGATCAC AAAGCTGAAA AATCACTGAC ATTGTTTAGA CACAGTGCCA CACACCTGTC
  CTCTTCACCT GGATCAAGCA CAAGCAAGCC TTATGTGACA AGCTCAGGGA TGACGCTATG
  GCAGAGGCAA GCAGACTTTC TAGCAGACTA GAGGGCTATC CTGTGAGACT TTCATGATAT
  K
  ATTCCACACC CACACCACAC CACGGGGCTG GGGACACAGA ATGCACAGAA GCTGCCTTCA
  TTCACTCGAC CTGTGCACCA GTAGACAGTC CTAATTAGTC CCTGACCTCT GAAGATTAAC
  TGGAGTCTGG GGCAGTGGCT CAGTTCATAA AGCACTTGCT TTGCAAGCAG GAGACCTAAG
  TTCGATCCCT GAGGACCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364466317	MGP_WTSI_5_33090117	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229300524					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364466317	MGP_WTSI_5_33090117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32904812 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	425 bp downstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	1167 bp distal
Rr609421	regulatory region 609421	974 bp distal
Rr609422	regulatory region 609422	587 bp distal
Rr609423	regulatory region 609423	125 bp proximal
Rr609424	regulatory region 609424	363 bp proximal
Rr609425	regulatory region 609425	627 bp proximal
Rr609426	regulatory region 609426	1515 bp proximal
Tssr45794	transcription start site region 45794	1344 bp downstream
Tssr45795	transcription start site region 45795	919 bp downstream
Tssr50589	transcription start site region 50589	1155 bp upstream
Tssr50590	transcription start site region 50590	1127 bp upstream
Tssr50591	transcription start site region 50591	1116 bp upstream