rs229303581 SNP Detail

Summary

• ID
  rs229303581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:151337808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGGTTAGT TCATAATGTT GTTCCACCTA TAGGGTTGCA
  GATCCCTTTA GCTCCTTGGC TACTTTCTCT AGCTCCTCCA TTGGGAGCCC TGTGATCCAT
  Y
  CATTAGCTGA CTGTGATCAT CCACTTCTGT GTTTGCTAGG CCCCGGCATA GTCTCACAAG
  AGACAGCTAC ATCTGGGTCC TTTCAATAAA ATCTTGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	KK/HlJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
ss351921972	MGP_WTSI_1_153309187	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	KK/HlJ	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J
rs229303581					SNP	C	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351921972	MGP_WTSI_1_153309187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151337808 () rs orientation: forward

Symbol	Name	Function Class
Rr372239	regulatory region 372239	551 bp downstream
Rr420294	regulatory region 420294	590 bp distal
Rr420295	regulatory region 420295	788 bp proximal