rs229305113 SNP Detail

Summary

• ID
  rs229305113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164676151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCGGAAC CGCGCTGTCT
  CCACTGCTCT TGTTGCTGCT CCTGTCCTGG GCGTCCCGGA ACGAAGCAGC TCCGGACCAG
  GATGAAATCG ATTGTCTCCC CGGCCTGGCC AAGCAGCCCT CTTTCCGGCA ATACTCCGGC
  TACCTCAGAG CATCGGACTC CAAGCACTTC CACTACTGGT GCTTGGCTTG GCCCTAAAGT
  Y
  CCTAGGAGGG CATGATAACT GGACGAGCGA ATTCTAACGA CCCCAGGCAG GACCTGGACT
  CACACCAATC CTTTCCTATC CTTCCCAGGT TTGTGGAGTC GCAGAACGAC CCAAAGAACA
  GCCCCGTGGT GCTTTGGCTT AACGGGGGTC CCGGCTGCAG CTCGCTCGAT GGGCTGCTTA
  CAGAGCACGG CCCCTTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441807	MGP_WTSI_2_164659731	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229305113					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441807	MGP_WTSI_2_164659731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164676151 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12674	CpG island 12674			within coordinates
Ctsa	cathepsin A			Intron
				Noncoding-Transcript-Variant
Neurl2	neuralized E3 ubiquitin protein ligase 2			775 bp upstream
Rr367364	regulatory region 367364			360 bp downstream
Rr569728	regulatory region 569728			1982 bp distal
Rr569729	regulatory region 569729			1320 bp distal
Rr569730	regulatory region 569730			285 bp distal
Tssr21656	transcription start site region 21656			1353 bp downstream
Tssr21657	transcription start site region 21657			1296 bp downstream
Tssr21658	transcription start site region 21658			1261 bp downstream
Tssr21659	transcription start site region 21659			456 bp downstream
Tssr21660	transcription start site region 21660			419 bp downstream
Tssr21661	transcription start site region 21661			379 bp downstream
Tssr21662	transcription start site region 21662			183 bp downstream
Tssr21663	transcription start site region 21663			134 bp downstream
Tssr21664	transcription start site region 21664			93 bp downstream
Tssr21665	transcription start site region 21665			632 bp upstream
Tssr21666	transcription start site region 21666			943 bp upstream
Tssr21667	transcription start site region 21667			996 bp upstream
Tssr21668	transcription start site region 21668			1398 bp upstream
Tssr21669	transcription start site region 21669			1450 bp upstream
Tssr27546	transcription start site region 27546			751 bp upstream