TGCCCGGAAC CGCGCTGTCT CCACTGCTCT TGTTGCTGCT CCTGTCCTGG GCGTCCCGGA ACGAAGCAGC TCCGGACCAG GATGAAATCG ATTGTCTCCC CGGCCTGGCC AAGCAGCCCT CTTTCCGGCA ATACTCCGGC TACCTCAGAG CATCGGACTC CAAGCACTTC CACTACTGGT GCTTGGCTTG GCCCTAAAGT Y CCTAGGAGGG CATGATAACT GGACGAGCGA ATTCTAACGA CCCCAGGCAG GACCTGGACT CACACCAATC CTTTCCTATC CTTCCCAGGT TTGTGGAGTC GCAGAACGAC CCAAAGAACA GCCCCGTGGT GCTTTGGCTT AACGGGGGTC CCGGCTGCAG CTCGCTCGAT GGGCTGCTTA CAGAGCACGG CCCCTTTCTG Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss356441807 | MGP_WTSI_2_164659731 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs229305113 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss356441807 | MGP_WTSI_2_164659731 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr2:164676151 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12674 | CpG island 12674 | within coordinates | ||||||
Ctsa | cathepsin A | within coordinates | ||||||
Neurl2 | neuralized E3 ubiquitin protein ligase 2 | 775 bp upstream | ||||||
Rr367364 | regulatory region 367364 | 360 bp downstream | ||||||
Tssr21656 | transcription start site region 21656 | 1353 bp downstream | ||||||
Tssr21657 | transcription start site region 21657 | 1296 bp downstream | ||||||
Tssr21658 | transcription start site region 21658 | 1261 bp downstream | ||||||
Tssr21659 | transcription start site region 21659 | 456 bp downstream | ||||||
Tssr21660 | transcription start site region 21660 | 419 bp downstream | ||||||
Tssr21661 | transcription start site region 21661 | 379 bp downstream | ||||||
Tssr21662 | transcription start site region 21662 | 183 bp downstream | ||||||
Tssr21663 | transcription start site region 21663 | 134 bp downstream | ||||||
Tssr21664 | transcription start site region 21664 | 93 bp downstream | ||||||
Tssr21665 | transcription start site region 21665 | 632 bp upstream | ||||||
Tssr21666 | transcription start site region 21666 | 943 bp upstream | ||||||
Tssr21667 | transcription start site region 21667 | 996 bp upstream | ||||||
Tssr21668 | transcription start site region 21668 | 1398 bp upstream | ||||||
Tssr21669 | transcription start site region 21669 | 1450 bp upstream | ||||||
Tssr27546 | transcription start site region 27546 | 751 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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