About   Help   FAQ
rs229313487 SNP Detail
Summary
  • ID
    rs229313487
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48040014 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCCTATATG GATGTAAGTC
TTAACACCCT TCTCCCAACC CAGGGTGTCT CTGTCCCTGC TGCCAAAAGG TCTTCTGCCT
GCCTTCCTGC CCTGGGTTGC ACACATCCTT TTCCTAACCT GCTATGGGCA ACTGTTGGAG
AGCCTGAGCT GGGGGGAGGG GGGGTTGCTT TCAGCTGAGC CCACGCACAG ACTGAGCATC
Y
GTTGCCGCTT GGGGCAGGTT TCGAGGGAAG ACTTGGGCCA GTGGTTTTGG TGCGGTCTGG
AGGGCAGCAG CTGAGTCCTT CTCCGCTTGC TTTTGGAGTT GCTGAGCCCT TAGATCCCTC
AGAGCTAAGC AGTTTATCCT GTAACATCCC CTACCCCACC AGGCTTCCTA CTATGGTGAG
ATCAGCATCG GGACTCCACC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398352943 MGP_WTSI_17_47866038 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229313487 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398352943 MGP_WTSI_17_47866038 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48040014 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D17Mit201 DNA segment, Chr 17, Massachusetts Institute of Technology 201 1754 bp distal
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 1620 bp proximal
Tssr5147 transcription start site region 5147 338 bp downstream
Tssr5148 transcription start site region 5148 221 bp downstream
Tssr145004 transcription start site region 145004 347 bp downstream
Tssr145005 transcription start site region 145005 326 bp downstream
Tssr145006 transcription start site region 145006 297 bp downstream
Tssr145007 transcription start site region 145007 265 bp downstream
Tssr145008 transcription start site region 145008 244 bp downstream
Tssr145009 transcription start site region 145009 216 bp downstream
Tssr145010 transcription start site region 145010 161 bp upstream
Tssr145011 transcription start site region 145011 174 bp upstream
Tssr145012 transcription start site region 145012 186 bp upstream
Tssr145013 transcription start site region 145013 205 bp upstream
Tssr145014 transcription start site region 145014 991 bp upstream
Tssr145015 transcription start site region 145015 1053 bp upstream
Tssr145016 transcription start site region 145016 1064 bp upstream
Tssr145017 transcription start site region 145017 1509 bp upstream
Tssr145018 transcription start site region 145018 1521 bp upstream
Tssr145019 transcription start site region 145019 1552 bp upstream
Tssr145020 transcription start site region 145020 1573 bp upstream
Tssr145021 transcription start site region 145021 1599 bp upstream
Tssr145022 transcription start site region 145022 1631 bp upstream
Tssr145023 transcription start site region 145023 1658 bp upstream
Tssr145024 transcription start site region 145024 1769 bp upstream
Tssr148459 transcription start site region 148459 288 bp upstream
Tssr148460 transcription start site region 148460 236 bp upstream
Tssr148461 transcription start site region 148461 224 bp upstream
Tssr148462 transcription start site region 148462 181 bp upstream
Tssr148463 transcription start site region 148463 189 bp downstream
Tssr148464 transcription start site region 148464 267 bp downstream
Tssr148465 transcription start site region 148465 1032 bp downstream
Tssr148466 transcription start site region 148466 1045 bp downstream
Tssr148467 transcription start site region 148467 1540 bp downstream
Tssr148468 transcription start site region 148468 1571 bp downstream
Tssr148469 transcription start site region 148469 1661 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory