rs229317701 SNP Detail

Summary

• ID
  rs229317701
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102489828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGCATC AACAGAGGGG
  TGAGAGCTTT TCTGGGTGCC CATGGGGAAG AGGGAGCCGC GCGCGGGGTG GTGCTGCCCT
  ATCCCAGATG GGGACAGAGA ACTGTGACCC TGGACCCCTG AAACCCTAGC AGAGCGCTGG
  AGGTGGTGGG AAAGGGGTCT GGTTTCTTTG GTAGACTAGC TGTCTTTTGA GGACCGGGAG
  K
  ATTTAACGGA AAGGGGTGAA AAAGTGTGAA AAGAAACCGT GGAGGTTACT TCAGAGATTT
  AAAGACAATA AAGAATTGTC CACGGAGCCT GCAGGAAACA CTGCCTGGGC TGCAAGGAGG
  GGACCAGTTG GAATGAATGA GCCAGGATCA GAGCCGGGGC GGGGCGAAGA GAAGCGCACA
  GCCTTGAATG CTAGCTTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355075032	MGP_WTSI_2_102499640	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229317701					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355075032	MGP_WTSI_2_102499640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102489828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	217 bp upstream
Rr561713	regulatory region 561713	814 bp distal
Rr561714	regulatory region 561714	671 bp distal
Rr561715	regulatory region 561715	192 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1244 bp downstream
Tssr19099	transcription start site region 19099	1172 bp downstream
Tssr19100	transcription start site region 19100	903 bp downstream
Tssr19101	transcription start site region 19101	814 bp downstream
Tssr19102	transcription start site region 19102	788 bp downstream
Tssr19103	transcription start site region 19103	741 bp downstream
Tssr19104	transcription start site region 19104	719 bp downstream
Tssr19105	transcription start site region 19105	649 bp downstream
Tssr19106	transcription start site region 19106	631 bp downstream
Tssr19107	transcription start site region 19107	611 bp downstream
Tssr19108	transcription start site region 19108	575 bp downstream
Tssr19109	transcription start site region 19109	533 bp downstream
Tssr19110	transcription start site region 19110	251 bp downstream