rs229321376 SNP Detail

Summary

• ID
  rs229321376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105281107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGGGG CATCTGGAAG
  TGAGAGGGAA ATTCTGGGGA ACAGTCAATG GATGTGCCTG GAAATCTGAG GAGGAGATGT
  GTGTTAAGGA CACATTTAGA TGAACTCAAG TTAGAATAAG GGCAGATTCA TCCTGGGATG
  CTGAGGAGAG GGATGGAGAC AAGCAGAGGT AAGACCAGCC ATGTAGGTGA ACGCAGGTTA
  R
  AATAATTGGG ATAATAAGTT AAGAGCAAGT TTGAGAACAA ACTTCAGCTT GTGACCCAAG
  CATTTATTAA ATAATTAGTC TCAGACTTGT TATTTTGGGG AATTAAGTGG CCAGGAAGGG
  GAAAAACAAA CTTGGATTGT TTTATATAGG CTATTTCTCT AGGAACACAA CAGAAACCCT
  TTTTCCTATA GATTGTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366134852	MGP_WTSI_5_105562260	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229321376					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366134852	MGP_WTSI_5_105562260	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105281107 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1455 bp upstream
Tssr52267	transcription start site region 52267	1909 bp upstream
Tssr52268	transcription start site region 52268	1855 bp upstream
Tssr52269	transcription start site region 52269	1780 bp upstream
Tssr52270	transcription start site region 52270	1618 bp upstream
Tssr52271	transcription start site region 52271	1500 bp upstream
Tssr52272	transcription start site region 52272	1437 bp upstream
Tssr52273	transcription start site region 52273	1359 bp upstream
Tssr52274	transcription start site region 52274	1328 bp upstream
Tssr52275	transcription start site region 52275	1303 bp upstream
Tssr52276	transcription start site region 52276	1269 bp upstream
Tssr52277	transcription start site region 52277	1253 bp upstream
Tssr52278	transcription start site region 52278	1226 bp upstream
Tssr52279	transcription start site region 52279	1164 bp upstream
Tssr52280	transcription start site region 52280	1113 bp upstream
Tssr52281	transcription start site region 52281	1082 bp upstream
Tssr52282	transcription start site region 52282	1065 bp upstream
Tssr52283	transcription start site region 52283	979 bp upstream
Tssr52284	transcription start site region 52284	922 bp upstream
Tssr52285	transcription start site region 52285	890 bp upstream
Tssr52286	transcription start site region 52286	860 bp upstream
Tssr52287	transcription start site region 52287	845 bp upstream
Tssr52288	transcription start site region 52288	831 bp upstream
Tssr52289	transcription start site region 52289	751 bp upstream
Tssr52290	transcription start site region 52290	644 bp upstream
Tssr52291	transcription start site region 52291	302 bp upstream
Tssr52292	transcription start site region 52292	166 bp downstream
Tssr52293	transcription start site region 52293	336 bp downstream
Tssr52294	transcription start site region 52294	433 bp downstream
Tssr52295	transcription start site region 52295	751 bp downstream
Tssr52296	transcription start site region 52296	1373 bp downstream
Tssr52297	transcription start site region 52297	1451 bp downstream
Tssr52298	transcription start site region 52298	1544 bp downstream