rs229329840 SNP Detail

Summary

• ID
  rs229329840
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:194659775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGACAGC AAATGGCAGA
  GCAGAGGACA GCTGTCACAG CCAAACCTGT TGCTGCTGCA TCATTTGTTG TGTCAGGATA
  GAGGGGTCTC TAGACCTTAC CCCTCCCTTT CCCAGACTCC TGGATGCCCT CCTGCCAGGT
  CGTATAGAGT CTGCTGTTAG CCAGGTGGTG TTGGTGTTGT GGCCTCCATC TGCCACCCAA
  M
  AGGGGAAGAA GAATGCAAGA GCCAGGGAAG TCTTTCTGTC TTCTGGGGTG GAAGGAGCAG
  GTATAGACAG GGCTGAGGCA GTAAGAGCCT GGGTTTCTTT GGCACTGGTG GCAAGAGGAT
  TGTATGCCAG CCCCTTGGGC TGGTTTCCAC TCCTGGCCTG TCAGTGGCAT TGGATAACTG
  CATTGGTGCT AATGGTGCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352898180	MGP_WTSI_1_196803661	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229329840					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352898180	MGP_WTSI_1_196803661	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194659775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1249	CpG island 1249	392 bp distal
Gm16897	predicted gene, 16897	508 bp upstream
Rr426734	regulatory region 426734	1042 bp distal
Rr426735	regulatory region 426735	1134 bp distal
Rr426736	regulatory region 426736	518 bp distal
Rr426737	regulatory region 426737	804 bp distal
Rr426738	regulatory region 426738	17 bp distal
Rr426739	regulatory region 426739	984 bp proximal
Tssr10848	transcription start site region 10848	1076 bp downstream
Tssr10849	transcription start site region 10849	1036 bp downstream
Tssr10850	transcription start site region 10850	408 bp downstream