rs229335284 SNP Detail

Summary

• ID
  rs229335284
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGTCCT CTGCCTTTGG
  GGACCTGAGG CCAACAAGGT TTGTCCCAGC TTCTGAAATG CTCGCATAGA CAGGCTAACT
  AGAGAATTTG GTATCCACCA CTTAGGGTTT GGTTTGGATC CAGGTTCTCA TGGGGGGAAA
  GGCCTGTCCT CGATTTGGTA GTGGTAGGGT CTACTAAGAC CTAGTTTTGT TTCAAGAGTG
  M
  AGTCTTAGGT AGACATGGTT GTCTTGGGGG CCTGGGCTCC CTAAGGAAGA CAAGAGGCTG
  CCCAGAAGGT CTTGTGGTTT TGAGAGTTGA GGTTCTGAGC AGCCTGGACT TGCTCAAGGT
  TGGCAGACCA CAGCCTGCGA CAGACACAAT GCTTGTGAAT GAGGTTCACC TATATATTTG
  GGGTTAATAA GACACCCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625287	CHEV_2_173403082	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229335284					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419374 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	208 bp proximal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	358 bp upstream
Rr571985	regulatory region 571985	194 bp proximal
Rr571986	regulatory region 571986	607 bp proximal
Tssr27995	transcription start site region 27995	590 bp downstream
Tssr27996	transcription start site region 27996	607 bp downstream
Tssr27997	transcription start site region 27997	622 bp downstream
Tssr27998	transcription start site region 27998	634 bp downstream
Tssr27999	transcription start site region 27999	719 bp downstream