rs229340685 SNP Detail

Summary

• ID
  rs229340685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162502803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC GGAGCAGGCA GAGGGCGAGC
  S
  CGCCAAGGCT CCCCATCCGG GCGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss639872256	FVB_NJ_2_162486619	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	G	C	C	C	C	C	C	C	G	G	C	G	G	G	G	G	C	G	G	G	G	C	C	C	C	C	G	G	C	C	C	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229340685					SNP	G	C	C	G	C	C	C	C	C	C	C	G	G	C	G	G	G	G	G	C	G	G	G	G	C	C	C	C	C	G	G	C	C	C	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639872256	FVB_NJ_2_162486619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162502803 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	280 bp upstream
Cpgi12617	CpG island 12617	within coordinates
Ptprt	protein tyrosine phosphatase receptor type T	within coordinates
Rr569218	regulatory region 569218	within coordinates
Rr569219	regulatory region 569219	1677 bp distal
Rr569220	regulatory region 569220	1340 bp distal
Rr569221	regulatory region 569221	201 bp proximal
Rr569222	regulatory region 569222	400 bp proximal
Tssr21417	transcription start site region 21417	309 bp upstream
Tssr21418	transcription start site region 21418	361 bp upstream
Tssr21419	transcription start site region 21419	421 bp upstream
Tssr27272	transcription start site region 27272	166 bp downstream
Tssr27273	transcription start site region 27273	192 bp downstream