rs229341417 SNP Detail

Summary

• ID
  rs229341417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95033313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAATTCA TCCCTAAGAA
  CATGCTCTTG CCAGCTGGCC TGAGACAACG TGACCAGACA AAGAAGAGTC CAACAGGGCC
  ACTGGACAGA GATGCCCTAT TGCAGTACCT GGAGCAACAG GCGCTAGAAG TCAAAGAGCG
  TGATGACTTG GTGCCCTACA CTGGCGAGAA GAAGGGTATG GGCACCCTAA CATCTATGCC
  Y
  CCCAGGAGCC AAATGGCTGT CTCTTGTGCC TCCCTGCTAG CTATTCTCCC TGTCTCCAGT
  AGCGATCTGT CAGAGACTCA GTCTTGATGA CTACATGCTA ATTTGTTCTC TTCAGTTTTT
  TGATTTTTGA GATAGGATCT CCTTGTGCAG CCCGGGTTGG CCCTGAACTA GCAGTCCTAC
  TACTCTAGCT TGCCAAATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358895524	MGP_WTSI_3_94929924	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229341417					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358895524	MGP_WTSI_3_94929924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95033313 () rs orientation: forward

Symbol	Name	Function Class
Rr580819	regulatory region 580819	1477 bp distal
Rr580820	regulatory region 580820	632 bp distal
Tmod4	tropomodulin 4	Intron
Tssr967	transcription start site region 967	1553 bp downstream
Tssr30491	transcription start site region 30491	1537 bp downstream
Tssr30492	transcription start site region 30492	1442 bp downstream
Tssr30493	transcription start site region 30493	187 bp upstream
Tssr30494	transcription start site region 30494	204 bp upstream
Tssr30495	transcription start site region 30495	216 bp upstream
Tssr30496	transcription start site region 30496	238 bp upstream
Tssr30497	transcription start site region 30497	1423 bp upstream