rs229355259 SNP Detail

Summary

• ID
  rs229355259
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:52258322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACCCGC CGGTCCCCTC
  CCTTCCCTCG CGCCGCCAAC GCCGGCAGCG CAGCTCCAGA GCAGCAAAGG AAGCGGGGCT
  GAAGCAGCGA CAGCGACACG GAAGACCCGC CCCGCCCGCA AGCCGGCCCG CCCCCGCCGC
  GCGTGCGTAG CGGAGCCCAG AGCAGGCGCA GCCCAGAGGG AGAAAGTGGG CGGGGCCGTA
  M
  GAGAGCTTAG CCAATGAAAA GCCTTCGCCT CCACAAGCCT GTCTGCGACC ATTTTGACGA
  CCGGCAAAAC CCTGAGAAGC AAAGGGTTGA GGTGGCCCCT TGCAAGTGGG GAAGACCGGA
  GGAAGGGAAG GGAAAGATTC CACGTCGCAG AGGGGACCGG CTTCCGCCAG TTTGGCTTCA
  CAGTGGGCCT GGAACCGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380399797	MGP_WTSI_10_52102032	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229355259					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380399797	MGP_WTSI_10_52102032	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:52258322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1535	CpG island 1535	within coordinates
Gm47580	predicted gene, 47580	1000 bp upstream
Gm67152	predicted gene, 67152	43 bp upstream
Gopc	golgi associated PDZ and coiled-coil motif containing	102 bp upstream
Rr431353	regulatory region 431353	within coordinates
Rr431354	regulatory region 431354	54 bp proximal
Tssr93299	transcription start site region 93299	727 bp downstream
Tssr97576	transcription start site region 97576	286 bp upstream
Tssr97577	transcription start site region 97577	248 bp upstream
Tssr97578	transcription start site region 97578	84 bp upstream