rs229361877 SNP Detail

Summary

• ID
  rs229361877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGCCATG CCACCCTGTG
  GAGGAAAGAG ACATGGGGTT AAATGGATAA AATCTCTCTC CTGTGTTACA CACACACTCA
  GACCTTGTGA GTGTGACACT AATGCAGATT AGGTTCTTGG CCAAGAGCTG GTGTGACACA
  CAGGCTATAC CTGCACCCAG AAGCTGCCTC TGACTCTGGA GCTGAGTCTA CCTGGCAGTT
  W
  GATGCTCTGC CTCCTCAGCA GAGCACAGGA TGCTCAAGAG GGATGCTGCA TCCTGTGAAT
  GTACAGTCCA CTGATGCTAC AGCTAGTCTA CAGGCCTGAG AAGGAAGAAG GTATATGGGG
  GACTCTCACA GGCTGGAGAA ATTCCCTAAA GATGATGCTG TAGGTTAAGC CCCCAGCTGC
  ACCTGCCCTT CTCAGAATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381913476	MGP_WTSI_10_116715429	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229361877					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381913476	MGP_WTSI_10_116715429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114278 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1033 bp downstream
Tssr95905	transcription start site region 95905	965 bp downstream
Tssr95906	transcription start site region 95906	911 bp downstream
Tssr95907	transcription start site region 95907	878 bp downstream
Tssr95908	transcription start site region 95908	697 bp downstream
Tssr95909	transcription start site region 95909	607 bp downstream
Tssr95910	transcription start site region 95910	461 bp downstream
Tssr95911	transcription start site region 95911	353 bp downstream
Tssr95912	transcription start site region 95912	282 bp downstream
Tssr95913	transcription start site region 95913	205 bp downstream
Tssr99410	transcription start site region 99410	921 bp upstream
Tssr99411	transcription start site region 99411	843 bp upstream
Tssr99412	transcription start site region 99412	737 bp upstream
Tssr99413	transcription start site region 99413	684 bp upstream
Tssr99414	transcription start site region 99414	570 bp upstream
Tssr99415	transcription start site region 99415	510 bp upstream
Tssr99416	transcription start site region 99416	443 bp upstream
Tssr99417	transcription start site region 99417	368 bp upstream
Tssr99418	transcription start site region 99418	349 bp upstream
Tssr99419	transcription start site region 99419	311 bp upstream
Tssr99420	transcription start site region 99420	253 bp upstream
Tssr99421	transcription start site region 99421	177 bp upstream
Tssr99422	transcription start site region 99422	532 bp downstream