rs229361878 SNP Detail

Summary

• ID
  rs229361878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118268135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGACTT CAGGCCAGGT
  GAACAGGTTG AAAGGTCTAA GGGTTGATGC TATCTGTAAC CCAAATACCA AGATAGAAAA
  CAATTTAGCT TTTCTGAATG TGTCACGCTC ACTTGTATCT GAGTAACCAA ACACACTGTT
  GATGCAGAGG GAGGAGAAGC AGCTTGAGGC ATCATTAGAT GCCCTGCTGA ATCAAGTGGC
  Y
  GATCTGAAGA ATTCACTGGG GAGTTTCATT TACAAGTTGG AAAACGAGTA TGACCGGCTG
  ACCTGGTAAG GATTGCCAGG ACAAGCTGGG GAGGGATCCA TGGGTGGTGG GGCCAAGCCC
  CCTGGCTGAC AGGACATCTC CAGCGATGTA CCCATTTATC AACTTGCAAA TATCCTTTTT
  GATTTGGAAA GAACTAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321283070	CHEV_4_118083543	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229361878					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118268135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14683	CpG island 14683	1116 bp distal
Med8	mediator complex subunit 8	within coordinates
Rr398422	regulatory region 398422	1477 bp downstream
Rr598388	regulatory region 598388	1676 bp distal
Rr598389	regulatory region 598389	1562 bp distal
Rr598390	regulatory region 598390	926 bp distal
Szt2	SZT2 subunit of KICSTOR complex	1665 bp upstream
Tssr1279	transcription start site region 1279	1546 bp downstream
Tssr38654	transcription start site region 38654	1564 bp downstream
Tssr38655	transcription start site region 38655	56 bp downstream
Tssr38656	transcription start site region 38656	798 bp upstream
Tssr43049	transcription start site region 43049	1656 bp upstream