rs229366828 SNP Detail

Summary

• ID
  rs229366828
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6918085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTGCA GGCAGACAGG
  GCAGCAATAG AGAAGCCAAA AAGGCAAGGG CCCCAGGCGG TTGGCCCTGG GAGTATCTCG
  GAAGTAGAAG GAGAAAAGTG TGGTACGCAA GGCTGCCCAG AGCAGACAGA GCGCCAGGAA
  TACTGTCTGA TAGCTGAGGC GCTTGTGCCC ATACAGAAGC ACCAGCCAGA GCTGGGCATA
  K
  ACAGAGAAGA AGAGCAGAGC ATATAGGGCA GTGTAGGCAG CGGTCAGCCC CAGGGTCACT
  GTAGGCGGCA GTGCAGGTAC CAGCCCAGCT GCAGGCACCA GACCAGACAG GTTACTCTCC
  ATGTCAAGGA GGGAGGCCTG AAACCCGGAG ACAGAGATAG AGGGCTGGCC AGAAGCCAGG
  GAAATAAATA CGGAGGGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683369	MGP_WTSI_19_7015207	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229366828					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683369	MGP_WTSI_19_7015207	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6918085 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	1144 bp upstream
Cpgi10534	CpG island 10534	23 bp proximal
Gm59107	predicted gene, 59107	709 bp downstream
Gpr137	G protein-coupled receptor 137	within coordinates
Rr405833	regulatory region 405833	645 bp upstream
Rr405834	regulatory region 405834	983 bp upstream
Rr405835	regulatory region 405835	1687 bp upstream
Rr543510	regulatory region 543510	112 bp proximal
Rr543511	regulatory region 543511	1147 bp proximal
Rr543512	regulatory region 543512	1723 bp proximal
Tssr154697	transcription start site region 154697	1158 bp upstream
Tssr154698	transcription start site region 154698	1184 bp upstream
Tssr154699	transcription start site region 154699	1826 bp upstream
Tssr154700	transcription start site region 154700	1876 bp upstream
Tssr154701	transcription start site region 154701	1906 bp upstream
Tssr157902	transcription start site region 157902	711 bp downstream
Tssr157903	transcription start site region 157903	1104 bp downstream
Tssr157904	transcription start site region 157904	1689 bp downstream