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rs229370379 SNP Detail
Summary
  • ID
    rs229370379
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:19429834 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGATGGCT CAGCAGTTAA
GAGCACTGAC TACTCTTCTA TAAGTCCTGA GTTCAATTCC CAGCAACCAC ATGGTGGCTC
ACAACCATCT GTAATGGGAC CTGACGCCTG AAGACAGCTG CAGTGTACCT TATACATAAG
ATAAACAAAT CTTAAATAAA TAAATAAATA AAATGAGCCC ATGCCTAGAA TCCAGGGGTA
R
GGGGCGGTGA AGAGCCCCAG AGGCTGTGGG TGTGGCTCAG TGGTAGAGCT ACTGACTAGA
ATTCCCGTAG TGAGGGGCTG GAGGGGCGTG ACTCAGTGGT AGATATGATT CCCCAGTGAG
GGGCTGCGGG TGGCTCAGTG GTAGAGCCCC TGCCTAGAAT CCCCCAGTGA GGGGCTGTGG
GCGTGGCTCA GTGGTAGATC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754784 MGP_WTSI_7_20281258 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229370379 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754784 MGP_WTSI_7_20281258 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429834 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 200 bp downstream
Cpgi18507 CpG island 18507 612 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1862 bp proximal
Gm71725 predicted gene, 71725 1209 bp upstream
Rr155346 regulatory region 155346 167 bp proximal
Rr167194 regulatory region 167194 566 bp proximal
Tssr2112 transcription start site region 2112 542 bp upstream
Tssr2113 transcription start site region 2113 567 bp upstream
Tssr2114 transcription start site region 2114 682 bp upstream
Tssr2115 transcription start site region 2115 718 bp upstream
Tssr2116 transcription start site region 2116 793 bp upstream
Tssr2117 transcription start site region 2117 815 bp upstream
Tssr2118 transcription start site region 2118 922 bp upstream
Tssr2119 transcription start site region 2119 931 bp downstream
Tssr2120 transcription start site region 2120 994 bp upstream
Tssr2121 transcription start site region 2121 1026 bp upstream
Tssr2122 transcription start site region 2122 1746 bp downstream
Tssr64880 transcription start site region 64880 359 bp upstream
Tssr64881 transcription start site region 64881 411 bp upstream
Tssr64882 transcription start site region 64882 455 bp upstream
Tssr64883 transcription start site region 64883 493 bp upstream
Tssr64884 transcription start site region 64884 520 bp upstream
Tssr64885 transcription start site region 64885 599 bp upstream
Tssr64886 transcription start site region 64886 620 bp upstream
Tssr64887 transcription start site region 64887 652 bp upstream
Tssr64888 transcription start site region 64888 871 bp upstream
Tssr64889 transcription start site region 64889 965 bp upstream
Tssr64890 transcription start site region 64890 1011 bp upstream
Tssr64891 transcription start site region 64891 1034 bp upstream
Tssr64892 transcription start site region 64892 1067 bp upstream
Tssr64893 transcription start site region 64893 1102 bp upstream
Tssr64894 transcription start site region 64894 1556 bp upstream
Tssr64895 transcription start site region 64895 1652 bp upstream
Tssr64896 transcription start site region 64896 1678 bp upstream
Tssr70973 transcription start site region 70973 383 bp downstream
Tssr70974 transcription start site region 70974 429 bp downstream
Tssr70975 transcription start site region 70975 457 bp downstream
Tssr70976 transcription start site region 70976 492 bp downstream
Tssr70977 transcription start site region 70977 540 bp downstream
Tssr70978 transcription start site region 70978 555 bp downstream
Tssr70979 transcription start site region 70979 579 bp downstream
Tssr70980 transcription start site region 70980 589 bp downstream
Tssr70981 transcription start site region 70981 610 bp downstream
Tssr70982 transcription start site region 70982 624 bp downstream
Tssr70983 transcription start site region 70983 657 bp downstream
Tssr70984 transcription start site region 70984 674 bp downstream
Tssr70985 transcription start site region 70985 739 bp downstream
Tssr70986 transcription start site region 70986 772 bp downstream
Tssr70987 transcription start site region 70987 802 bp downstream
Tssr70988 transcription start site region 70988 846 bp downstream
Tssr70989 transcription start site region 70989 885 bp downstream
Tssr70990 transcription start site region 70990 897 bp downstream
Tssr70991 transcription start site region 70991 942 bp downstream
Tssr70992 transcription start site region 70992 950 bp downstream
Tssr70993 transcription start site region 70993 959 bp downstream
Tssr70994 transcription start site region 70994 1000 bp downstream
Tssr70995 transcription start site region 70995 1005 bp downstream
Tssr70996 transcription start site region 70996 1038 bp downstream
Tssr70997 transcription start site region 70997 1072 bp downstream
Tssr70998 transcription start site region 70998 1134 bp downstream
Tssr70999 transcription start site region 70999 1152 bp downstream
Tssr71000 transcription start site region 71000 1595 bp downstream
Tssr71001 transcription start site region 71001 1625 bp downstream
Tssr71002 transcription start site region 71002 1685 bp downstream
Tssr71003 transcription start site region 71003 1703 bp downstream
Tssr71004 transcription start site region 71004 1731 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory