rs229370980 SNP Detail

Summary

• ID
  rs229370980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCCTC AATCTGCCTC
  TCTCAGCACC CACTTGCCTC CCTGCTCCTG AGTCCATCTC GACAGCCACT CATCTCAGGG
  CCTCTATACT GCCGTTCCCT CTCCCGGAGG AGAGTCACCT CCTTCACTGG AAGTCTTCTT
  TGATTCTGTA CATGAGCATT CTCTAATCCT GAGTTTTGCT CTATTTTTCT TGCTAGCAAA
  M
  TAAAAATCAT CTGATGATTG ATGTAAGTAT TCCAGTTATT ATCTGCTGTC TTCCTCCACT
  ACAGTGTCAG TTTCAGAGGG TCCCACTATG TAGCCTGGGC TGTCATGGAA CTTGCTATGT
  AGTCCAGGCT AGCCTCAAAC TTGCTGCCAT CTTCCTTCTG TTTCCCAGGT GCAAAGATTA
  CAGGAATACA TCACCACACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370920858	MGP_WTSI_7_31820795	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229370980					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370920858	MGP_WTSI_7_31820795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735201 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	Intron
Gm38984	predicted gene, 38984	1067 bp upstream
Gm71772	predicted gene, 71772	1213 bp upstream
Rr644978	regulatory region 644978	1418 bp distal
Rr644979	regulatory region 644979	697 bp distal
Rr644980	regulatory region 644980	752 bp distal
Rr644981	regulatory region 644981	1123 bp proximal
Rr644982	regulatory region 644982	1224 bp proximal
Tssr2191	transcription start site region 2191	291 bp upstream
Tssr65830	transcription start site region 65830	508 bp downstream
Tssr65831	transcription start site region 65831	1212 bp upstream
Tssr65832	transcription start site region 65832	1632 bp upstream
Tssr71891	transcription start site region 71891	681 bp downstream
Tssr71892	transcription start site region 71892	1242 bp downstream