rs229385795 SNP Detail

Summary

• ID
  rs229385795
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127920806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTATAT TAAGTTCAGT
  AAAAGGAAAA TATCAAAAAA GAGGATTATT TGTTCTTGAG ACTTTTTTTT TTTGGTTTTT
  CGAGACAGGG TTTCTCTGTA TAGCCCTGGC TGTCCTGGAG CTCACTCTGT AGACCAGGCT
  GGCCTCGAAC TCAGAAATCT GCCCGCCTCT GCCTCCCAAG TGCTGGGATC AAAGGCGTGC
  S
  CCACCACGCC CGGCGAGACA ATATTTTTTA TTGCAGAGAG ATGATGTTCT GTGACAGCTT
  AACTTGAACA AGATTAGACT TGACTGTTTG TGGTGGCCAG TGGCTTTTGA GCATGGTGCC
  TGGTTCTGAC CCTTTCCTCC CTGAACCTTA CAGATTTGCT CCTATTCATG CTGAGGCTCC
  TGAGTTCATA GAGATGAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382197812	MGP_WTSI_10_127521993	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229385795					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382197812	MGP_WTSI_10_127521993	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127920806 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	790 bp distal
Gm47438	predicted gene, 47438	1754 bp upstream
Gm55458	predicted gene, 55458	352 bp upstream
Mir677	microRNA 677	349 bp upstream
Rr402340	regulatory region 402340	1625 bp downstream
Rr441096	regulatory region 441096	1878 bp distal
Rr441097	regulatory region 441097	1654 bp distal
Rr441098	regulatory region 441098	1532 bp proximal
Rr441099	regulatory region 441099	1632 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	721 bp downstream
Tssr96319	transcription start site region 96319	1628 bp downstream
Tssr96320	transcription start site region 96320	999 bp downstream
Tssr96321	transcription start site region 96321	952 bp downstream
Tssr96322	transcription start site region 96322	573 bp upstream
Tssr96323	transcription start site region 96323	1094 bp upstream
Tssr96324	transcription start site region 96324	1195 bp upstream
Tssr96325	transcription start site region 96325	1355 bp upstream
Tssr96326	transcription start site region 96326	1372 bp upstream
Tssr96327	transcription start site region 96327	1388 bp upstream
Tssr96328	transcription start site region 96328	1435 bp upstream
Tssr99834	transcription start site region 99834	1956 bp upstream