rs229388152 SNP Detail

Summary

• ID
  rs229388152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAACTACT CAAAAGTTTA
  ACCCTTTCCT ATGGATTATA TAGTGCTGTT AACTGAATAA AGAAATCAAC AAGAACTTTG
  CACTTATAAT GCTATTGTTT GGAATATAGA CTGAGCCATA TGAGACGATC TCAAAACAAA
  CCAAAACCAA TTGAGAAATA TTCTAACAAT GCAATGCAAA CCCTGAGGAC ATCTTTCCGA
  Y
  CTGTATAAGG GGATATGAAA CAGGAGTGGA GATAATGAAT CTGGGTTAAA GACAAATACA
  TGCTCTTTAC TTTCTCCTTA GACTGCTCAT TCCACACGCC AGATGGCAAA ATGCAATCCA
  TTCAAACATA TTTATCTTGA TTTAATACCA AATCAAATGA TTTATGACTC TCAAACAAAA
  GAAATAAAAA ATGAAGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370220287	MGP_WTSI_6_136775231	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229388152					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	T	C	C	C	C	C	C	T	T	C	T	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370220287	MGP_WTSI_6_136775231	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803708 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	916 bp upstream
Cpgi18110	CpG island 18110	859 bp proximal
Rr380176	regulatory region 380176	314 bp upstream
Rr640072	regulatory region 640072	573 bp proximal
Rr640073	regulatory region 640073	1513 bp proximal
Tssr2044	transcription start site region 2044	1747 bp upstream
Tssr59337	transcription start site region 59337	1035 bp upstream
Tssr59338	transcription start site region 59338	1051 bp upstream
Tssr59339	transcription start site region 59339	1089 bp upstream
Tssr59340	transcription start site region 59340	1120 bp upstream
Tssr59341	transcription start site region 59341	1704 bp upstream
Tssr63834	transcription start site region 63834	677 bp upstream
Tssr63835	transcription start site region 63835	614 bp upstream
Tssr63836	transcription start site region 63836	1004 bp downstream
Tssr63837	transcription start site region 63837	1037 bp downstream
Tssr63838	transcription start site region 63838	1056 bp downstream
Tssr63839	transcription start site region 63839	1110 bp downstream
Tssr63840	transcription start site region 63840	1341 bp downstream
Tssr63841	transcription start site region 63841	1414 bp downstream
Tssr63842	transcription start site region 63842	1476 bp downstream
Wbp11	WW domain binding protein 11	within coordinates