rs229390217 SNP Detail

Summary

• ID
  rs229390217
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46385157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGGCA CATTTCGAGT
  TACCCTTTTT GTCAATAGTT CCAAGAAATA TTAGAGTTGT AACATTAATA ATAATGACAT
  ACTGTCTAAT GAATTAGTTG TCAAGCTTAT CTTAAAATTG TGTATTAGTA AAACAATATT
  AAGCGCTTCT TAGTAGTTGT GTAGAGCTTT CATAGGACCC TGGCGCCTCA AGGTACCAAG
  W
  CTCTGTTCTA AACTGGGTTC CTCCTAACAC TAGGGGGAGG CCAAGATCCT TGGGACGCTC
  CCAACCCAGG GGCAGGGAGG CGGAGTCTAT TGTCAAGTCA CGCCTTCCCC ACTTGTGACT
  GGCAAAGACA CTAGCCAATA GGTGTCAGGA AAGGGCACGC TGACGCCCCG CCCCTTGGAG
  CTCCCCGCGG TCCCACAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595873	MGP_WTSI_19_46471208	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229390217					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595873	MGP_WTSI_19_46471208	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46385157 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	977 bp upstream
Cpgi11001	CpG island 11001	816 bp distal
Cpgi11002	CpG island 11002	within coordinates
Gm59146	predicted gene, 59146	561 bp downstream
Rr405999	regulatory region 405999	1378 bp downstream
Rr406000	regulatory region 406000	734 bp downstream
Rr406001	regulatory region 406001	within coordinates
Rr548727	regulatory region 548727	1615 bp distal
Rr548728	regulatory region 548728	991 bp distal
Rr548729	regulatory region 548729	481 bp distal
Rr548730	regulatory region 548730	within coordinates
Rr548731	regulatory region 548731	23 bp proximal
Rr548732	regulatory region 548732	131 bp proximal
Rr548733	regulatory region 548733	843 bp proximal
Rr548734	regulatory region 548734	885 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	178 bp upstream
Tssr156751	transcription start site region 156751	1353 bp downstream
Tssr156752	transcription start site region 156752	1325 bp downstream
Tssr156753	transcription start site region 156753	167 bp upstream
Tssr156754	transcription start site region 156754	291 bp upstream
Tssr159650	transcription start site region 159650	962 bp upstream