rs229390726 SNP Detail

Summary

• ID
  rs229390726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31757606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tataccgag acatcccata agctctgtga
  ctctagagaa ccctgactaa ttcaCTTGAC TTGAGTAATG TGCTGAACCC TGAAATAACC
  TTCATGACCA AGGAGGCACA AACTATTTGG ATCAAACCAT TCAGGTTTAG TTCATGCCTA
  R
  ATCTAGGGTT TAGACTCtgt cttgatttct ttttctgatg ctgtgataaa aatgcaaaca
  cagtttaatg ggcaaagcat ttattgtggc tcacgttcaa gggtaaagtt gtcctggtgg
  ggaagtcaag gctgcagaaa ctggaagcag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325135616	CHEV_16_31938874	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229390726					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31757606 () rs orientation: forward

Symbol	Name	Function Class
Pigz	phosphatidylinositol glycan anchor biosynthesis, class Z	within coordinates
Rr317639	regulatory region 317639	1806 bp distal
Rr317640	regulatory region 317640	806 bp distal
Rr323364	regulatory region 323364	1890 bp distal
Rr326503	regulatory region 326503	1747 bp proximal