rs229394078 SNP Detail

Summary

• ID
  rs229394078
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58599971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGGGCTGG GCGGGGCGGG GGGCGGGGCT CGGAATCCCA
  CGTTTCTTTT AGCCATTGAC GCGCTGGAGC AGCTGGCGAT CAGGCTACTC GGCCGGTAGC
  C
  TGACACGCGG GGGCGGGACC CGGAGTCGGG CGGGAGCCGC GCGAAGGCCT CGGGTGTGGC
  CCGGCAGTTA GGTACGAGGG TGGGCTCTTC AGTGGTTGG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320783426	CHEV_3_58496472	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229394078					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58599971 () rs orientation: forward

Symbol	Name	Function Class
4930593A02Rik	RIKEN cDNA 4930593A02 gene	39 bp upstream
Cpgi13205	CpG island 13205	1558 bp distal
Cpgi13206	CpG island 13206	within coordinates
Rr367441	regulatory region 367441	1755 bp downstream
Rr577266	regulatory region 577266	1661 bp distal
Rr577267	regulatory region 577267	1202 bp distal
Rr577268	regulatory region 577268	490 bp distal
Rr577269	regulatory region 577269	257 bp distal
Rr577270	regulatory region 577270	within coordinates
Rr577271	regulatory region 577271	81 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2	150 bp upstream
Tssr29217	transcription start site region 29217	14 bp downstream
Tssr29218	transcription start site region 29218	61 bp upstream
Tssr33366	transcription start site region 33366	535 bp upstream
Tssr33367	transcription start site region 33367	427 bp upstream
Tssr33368	transcription start site region 33368	138 bp upstream
Tssr33369	transcription start site region 33369	107 bp upstream