rs229400325 SNP Detail

Summary

• ID
  rs229400325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116900548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGAGCTGG AGCTATGGCT
  CAGCGGTTAA GAGCACTGAC TGCTCTTCCA GAGGTCCTGA GTTCAATTCC CAGTAACCAC
  ATGGTGGCTC ACAGCCATCT GTAATGGGAT CTGATGCCCT CTTCTGGTGT GTCTGAAGAC
  AGCTACAGTA TACTCATATA AATAATAAAT AAATAAAACC TTTAAAAAAA TTAGTTTTCT
  Y
  GGGCTGGCGA GATGGCTTAG CAGTTAAGAG CACTGATGGC TCTTCCGAAG GTCCTGAGTT
  CAAATCCCAG CAACCATAGG TTGGCTCACA ACCACCTGTA ATGAGATCTG ATGCCCTCCT
  CTGGTGCGTC TGAAGAGTCA GCTACAGTGT ACTTATGTAT AATAATAAAT AAATCTTTGG
  CTCAGAGCGA GCAGGAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381909340	MGP_WTSI_10_116501699	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229400325					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381909340	MGP_WTSI_10_116501699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116900548 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	829 bp upstream
Cpgi2223	CpG island 2223	605 bp distal
Rr402250	regulatory region 402250	610 bp downstream
Rr439433	regulatory region 439433	339 bp distal
Rr439434	regulatory region 439434	69 bp distal
Rr439435	regulatory region 439435	108 bp proximal
Rr439436	regulatory region 439436	481 bp proximal
Tssr99381	transcription start site region 99381	1585 bp upstream
Tssr99382	transcription start site region 99382	1277 bp upstream
Tssr99383	transcription start site region 99383	891 bp upstream
Tssr99384	transcription start site region 99384	841 bp upstream