rs229409962 SNP Detail

Summary

• ID
  rs229409962
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:23474429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACATCAGA CCTTGTCCAC
  CCTGGAGAGC ATAGACGTTC AGGAGTTTAT TAAGCAAAGA CTCGCAGAAG CCGACCTGGA
  CCCCAGCGTG CCCCCTTATG ACTCTCTTCA GACTTATGCC TACGAGGGCC AGCGGTCAGA
  AGCTGGGTCT ATCAGCTCAC TGGACTCCGC AACCACGCAA TCAGACCAGG ATTATCACTA
  T
  CTTGGAGACT GGGGGCCCGA GTTTAAGAAG TTAGCTGAAC TCTATGGAGA AATAGAATCT
  GAAAGAACAA CTTAGGGGGT TCCTTTTTTT TTTTTTTTTT TTTTTTTTTT TTGGAGCTAT
  GTAGAATTTG CTTCCTGACC AAGTGGAGAT ATGACCTCAA TAGGACAAGG AAGTCAAGCC
  GAAACAGTAC TTGGAACTGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324891320	CHEV_15_23404098	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229409962					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23474429 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	within coordinates
Cpgi6966	CpG island 6966	123 bp distal
Gm56739	predicted gene, 56739	84 bp upstream
Tssr130794	transcription start site region 130794	111 bp upstream