rs229410646 SNP Detail

Summary

• ID
  rs229410646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141391655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGTCA GGCGGGGCGG
  CGCCAGCACC GGCCGGGAGG GACGGCGGCG ACCAGGCGGG CCCGCCTCCT CCGAGACCCG
  GGGCGATGGA GACCTGGGAG CTCAGAGATC CGGAGCCCCG GGGACCTGCA GACCTAGGGG
  ACTCACACAG CCCGGATCGC ATAGACCCAG GACCTCACAG AGCCAGAATC GCATAGATCC
  R
  GCACCGCAGA GCCTCGGGAC CTCAAACACG CTGGGACTCA AAGACTTCGC CTCCCACTTC
  CCAATCCTGC ACAAACTCCT CATGAGACCC TGGGAGCTCA CCGATCTCCA GAGCCACCCT
  GCTCAAAGAC CCCGGGAACC TCACAGACCC CGGGCCCCCT CCCAGCTCCT CTGAGATACC
  GTATTGTCCG TGTTGTCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363526262	MGP_WTSI_4_141220259	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229410646					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363526262	MGP_WTSI_4_141220259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141391655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	within coordinates
Gm54266	predicted gene, 54266	within coordinates
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	198 bp upstream
Rr603850	regulatory region 603850	239 bp distal
Rr603851	regulatory region 603851	137 bp distal
Rr603852	regulatory region 603852	within coordinates
Rr603853	regulatory region 603853	545 bp proximal
Tssr40091	transcription start site region 40091	113 bp downstream
Tssr40092	transcription start site region 40092	95 bp downstream
Tssr44355	transcription start site region 44355	323 bp upstream
Tssr44356	transcription start site region 44356	174 bp upstream