rs229413881 SNP Detail

Summary

• ID
  rs229413881
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87263443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAAATTG TTATTGCTTT TATACATTTT
  AATTGTTGAT ACTTCTAACA GTATTAAGCT CATGAAGCTG TATTCAGAAT TTATAGATGA
  TATTCACATT ATTGCAGAGC CAACCAAGAC ATTGTAGTGA GATACCCCTT ATTGccgccc
  S
  cccccccccc ccccactccc ctcccacccc ttacccctcc AAAAAACAAA AGAAGCAAGA
  ATAAAGAGTA ATAGTACTTA GCTGTTGGGG AAGATGAGTG ACATCGTATA GATTTTAGAA
  ATTACATATA TCTAAATTAT TAGGAAATTT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829305	CHEV_1_89232296	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229413881					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87263443 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Rr27962	regulatory region 27962	1497 bp proximal
Tssr7841	transcription start site region 7841	887 bp upstream