rs229421613 SNP Detail

Summary

• ID
  rs229421613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCCTTTC CCGTTGCCCC
  AGCAGCTAAG TCAGGGGCTA CTCAGCTTCC CCTGGGGCTC AGCTCCTCAC CCCGATCCTG
  TCCCCACTTC AGCTCTTGTT TTTTTGGCTT TTATTTGTAT GAATTCCTTG GGAACTTCAC
  ATGTATTTCG ATCACAATCC CTCCTCTACC CCTCTCCTCC CAGAACCACC CCCATCCTAT
  Y
  CCAGCTCACC GACTCCGTGT CCTTATTCAT TTCTGCTAAA CTTTTTGTTT TCGAGCTTTC
  TTTTTAATTA TGTATATGTG CCCAGGGAGG CTAGAGAACT CAGATCTCCC TGTGGCAGTC
  GTGAGTTGCC CATCACTATA GGTGCTGGGA GTCGAACTTG TGTCCTCTGC AAGAGCAGTG
  TGTGCTCTTA GCCACCGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323224494	CHEV_9_119978329	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229421613					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898277 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	915 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	1450 bp proximal
Tssr92011	transcription start site region 92011	920 bp upstream
Tssr92012	transcription start site region 92012	910 bp upstream