rs229424560 SNP Detail

Summary

• ID
  rs229424560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106861925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGCTC CTAATCCCCA
  CCCCTAGCCT AGTTCCCTGT CACCTCCTCT AGGCCAAATG AGAGCAGTCG CACATAACCC
  AAGCCCCCAT TAAACACACT CCAGGAGTCT GGAGTCGGGC CAGAGCAAAC ACCTGGTGGA
  GTGAGGCAAG CAGGTGGGGA GGGGAGGAGC AAAGCAGGTT AAACCTGTCC TGGACCAGGC
  R
  CCACCCTCAG ACAGGTGGGG GAGGTTCACA CCTGCCCGAG GGCCAAAAGG CCCATGGTCA
  ATGGCAGCCC CGCCCCTTGG TCCGACCAAC CCAGGAACAG AGCCACCAAG GACAGAGCTT
  CATACTTGGC CACTCGCAGC AGCCTGAGCT TTGACCCACA CCCCATCGAC CAACTGGCAC
  AGAACTGTTT GCTCGTAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375925143	MGP_WTSI_8_108659193	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229424560					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375925143	MGP_WTSI_8_108659193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106861925 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	107 bp upstream
Cpgi20965	CpG island 20965	449 bp proximal
Esrp2	epithelial splicing regulatory protein 2	within coordinates
Rr185913	regulatory region 185913	within coordinates
Tssr79219	transcription start site region 79219	108 bp upstream
Tssr79220	transcription start site region 79220	142 bp upstream
Tssr79221	transcription start site region 79221	171 bp upstream
Tssr79222	transcription start site region 79222	204 bp upstream
Tssr79223	transcription start site region 79223	248 bp upstream
Tssr79224	transcription start site region 79224	576 bp upstream
Tssr79225	transcription start site region 79225	649 bp upstream
Tssr79226	transcription start site region 79226	1765 bp upstream
Tssr82755	transcription start site region 82755	350 bp upstream
Tssr82756	transcription start site region 82756	333 bp upstream
Tssr82757	transcription start site region 82757	1499 bp downstream
Tssr82758	transcription start site region 82758	1597 bp downstream