rs229425230 SNP Detail

Summary

• ID
  rs229425230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21873459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGAGCA TTTTTGACTA
  CCACGATGGT AGTGCCCTAA TTCCAACGTA ATACCTGAGT CCATTGATGG AAAAGAATTA
  TTCCAGCTCC GGCCACCCAG GGGCGACCTC CACACCATCC GCACCACCCC CATCCCCTCC
  TCCGTTCCCG GAGTTTCCCA CCCTTAACCT AGTCTCCAGG CCCATCCAGG AAGCTCTGCT
  S
  TACCCACCCC TCCTAAGGCC ACCCAGTCCT GAGGACTCAC TCGAGCTGGT ATGAGAAGCT
  GTAGTTGAAG TCCATCCCGG AGCTCGCCGC TTCCTCCCAG AAACACACCA AGTCTTCCAA
  GCGTTGGGTG AAGCACAGAA GTTCTTCGGA GCCCCGGGAT GCCAGCAGGG CCGCTAGAAA
  AGGGGATAGC CATGGCGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376877727	MGP_WTSI_9_21766607	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229425230					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376877727	MGP_WTSI_9_21766607	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21873459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	1253 bp distal
Cpgi21465	CpG island 21465	within coordinates
D9Mit86	DNA segment, Chr 9, Massachusetts Institute of Technology 86	1806 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	1306 bp distal
Rr675080	regulatory region 675080	625 bp distal
Rr675081	regulatory region 675081	591 bp distal
Rr675082	regulatory region 675082	1333 bp proximal
Tssr2805	transcription start site region 2805	146 bp downstream
Tssr88426	transcription start site region 88426	178 bp downstream
Tssr88427	transcription start site region 88427	223 bp downstream
Tssr88428	transcription start site region 88428	1380 bp downstream
Tssr88429	transcription start site region 88429	1405 bp downstream
Tssr88430	transcription start site region 88430	1432 bp downstream