rs229430352 SNP Detail

Summary

• ID
  rs229430352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCCTGA AATGGGAAAC
  CCGGACATCG CTCCCCTCGC AAGATGAAGA CCCGGAGCCG GGATCCCCCA CACTCCGCCC
  GGCTCAGGCC GGCTCAGCAG GAGTCTCCGG GGCCGCAGCC CGGCTACTGC AGGAGGCAGG
  GGAAACGACG GCGGAAGGAA GACGGACGAA AGGAGGGAGG CGGGGGCGGG GACCAGGCCC
  R
  GGCTACCTGC GGGTCGGAGC GCAGGCGGTC CGCAGTCGCC ATGGCTGCGC GCCACCTCCA
  GCCGCCCGAG GCACCCGGCT CCTCACGAGC CGTGACAGGC GGCCAGCGGC GGCAGGTGAC
  GAGCAGCCGC CCACCTCGGG CGCCGGCGTC TGTGAGCCGC CCAGCTGGTT CCCGGGGGTG
  AGAGGAGCCG GGACACACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325524294	CHEV_18_10609707	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229430352					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	within coordinates
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	46 bp proximal
Rr533780	regulatory region 533780	390 bp proximal
Rr533781	regulatory region 533781	406 bp proximal
Rr533782	regulatory region 533782	712 bp proximal
Tssr152429	transcription start site region 152429	339 bp downstream
Tssr152430	transcription start site region 152430	415 bp downstream
Tssr152431	transcription start site region 152431	560 bp downstream
Tssr152432	transcription start site region 152432	592 bp downstream
Tssr152433	transcription start site region 152433	637 bp downstream